Books

 

 

 

Projects

 

 

 

Citation

 

Editorships

Current Drug Targets

Frontiers Section Editor (Bioinformatics and Biophysics) for the Current Drug Targets ISSN: 1873-5592

Bentham Link

Current Medicinal Chemistry

Section Editor (Bioinformatics in Drug Design and Discovery) for the Current Medicinal Chemistry ISSN: 1875-533X

Bentham Link

Combinatorial Chemistry and High Throughput Screening

Section Editor (Combinatorial/Medicinal Chemistry) for the Combinatorial Chemistry and High Throughput Screening ISSN: 1875-5402

Bentham Link

Current Bioinformatics

Member of the Editorial Board for the Current Bioinformatics ISSN: 2212-392X (Online) ISSN: 1574-8936 (Print)

Bentham Link

Organic and Medicinal Chemistry International Journal

Member of the Editorial Board for the Organic and Medicinal Chemistry International Journal ISSN: 2474-7610

Bentham Link

Bioengineering International

Section Editor in Chief (Bioinformatics) for Bioengineering International. ISSN 2668-7119

Bioengineering International

 

Molecular Simulations 

Our molecular world challenges us on an everyday basis to establish the theoretical foundations to understand it. From biological molecules to the next generation of nanomaterials, the possibility of simulating them is compelling. The impact of our scientific and technological development inspires a new generation of scientists to create new computational models to simulate molecules. The success of quantum mechanics makes it clear that it is our ultimate goal to simulate molecules. On the other hand, it is evident that computer power only limits simulations of polymers. Therefore, the development and application of classical and hybrid methodologies still have a beneficial impact to assess the behavior of molecules (de Azevedo and Dias, 2008). In our research, we focus on the development of a new generation of force fields targeted to the molecular system of interest (de Azevedo, 2011). We have been working on the development of new computational tools to study biomolecules (de Azevedo et al., 2001) and the interaction between them (Bitencourt-Ferreira and de Azevedo, 2019).

References     

Bitencourt-Ferreira G, de Azevedo WF Jr. Molecular Dynamics Simulations with NAMD2. Methods Mol Biol. 2019; 2053: 109–124.   PubMed   

De Azevedo WF Jr, Canduri F, Fadel V, Teodoro LG, Hial V, Gomes RA. Molecular model for the binary complex of uropepsin and pepstatin. Biochem Biophys Res Commun. 2001; 287(1): 277–281.   PubMed   

De Azevedo WF Jr, Dias R. Computational methods for calculation of ligand-binding affinity. Curr Drug Targets. 2008; 9(12): 1031–1039. PubMed     

De Azevedo WF Jr. Molecular dynamics simulations of protein targets identified in Mycobacterium tuberculosis. Curr Med Chem. 2011; 18(9): 1353–1366. PubMed